Publications

T.-a. Pham, E. Soubies, F. Soulez, M. Unser, "Optical Diffraction Tomography from Single-Molecule Localization Microscopy." Under review, 2021.

T. Hong, T.-a. Pham, E. Treister, M. Unser, "Diffraction Tomography with Helmholtz Equation: Efficient and Robust Multigrid Based Solver." Under review, 2021.

J. Griffie, T.-a. Pham, C. Sieben, R. Lang, V. Cevher, S. Holden, M. Unser, S. Manley, D. Sage, "Virtual-SMLM, a virtual environment for real-time interactive SMLM acquisition." Under review, 2020.

F. Yang, T.-a. Pham, N. Brandenberg, M. Lütolf, J. Ma, M. Unser, "Robust Phase Unwrapping via Deep Image Prior for Quantitative Phase Imaging." Under review, 2020.

T.-a. Pham, E. Soubies, A. Ayoub, J. Lim, D. Psaltis, M. Unser, "Three-Dimensional Optical Diffraction Tomography with Lippmann-Schwinger Model." IEEE Transactions on Computational Imaging, 6, 727--738, 2020.

A.B. Ayoub, T.-a. Pham, J. Lim, M. Unser, D. Psaltis, "A Method for Assessing the Fidelity of Optical Diffraction Tomography Reconstruction Methods Using Structured Illumination." Optics Communications, 454, 124486, 1--6, January 1, 2020.

F. Yang, T.-a. Pham, H. Gupta, M. Unser, J. Ma, "Deep-Learning Projector for Optical Diffraction Tomography." Optics Express, 28, 3, 3905--3921, February 3, 2020.

D. Sage, T.-a. Pham, H. Babcock, T. Lukes, T. Pengo, J. Chao, R. Velmurugan, A. Herbert, A. Agrawal, S. Colabrese, A. Wheeler, A. Archetti, B. Rieger, R. Ober, G.M. Hagen, J.-B. Sibarita, J. Ries, R. Henriques, M. Unser, S. Holden, "Super-Resolution Fight Club: Assessment of 2D and 3D Single-Molecule Localization Microscopy Software." Nature Methods---Techniques for Life Scientists and Chemists, 16, 5, 387--395, May 2019.

E. Soubies, F. Soulez, M.T. McCann, T.-a. Pham, L. Donati, T. Debarre, D. Sage, M. Unser, "Pocket Guide to Solve Inverse Problems with GlobalBioIm." Inverse Problems, 35, 10, 1--20, October 2019.

T.-a. Pham, E. Soubies, A. Goy, J. Lim, F. Soulez, D. Psaltis, M. Unser, "Versatile Reconstruction Framework for Diffraction Tomography with Intensity Measurements and Multiple Scattering." Optics Express, 26, 3, 2749--2763, February 5, 2018.

E. Soubies, T.-a. Pham, M. Unser, "Efficient Inversion of Multiple-Scattering Model for Optical Diffraction Tomography." Optics Express, 25, 8, 21786--21800, September 4, 2017.

Q. Denoyelle, T.-a. Pham, P. Aguila, D. Sage, M. Unser, "Optimal-Transport-Based Metric for SMLM." Proceedings of the Eighteenth IEEE International Symposium on Biomedical Imaging (ISBI’21), 797--801, April 13-16, 2021.

T.-a. Pham, E. Soubies, F. Soulez, M. Unser, "Diffraction Tomography from Single-Molecule Localization Microscopy: Numerical Feasibility." Proceedings of the Eighteenth IEEE International Symposium on Biomedical Imaging (ISBI’21), 854--857, April 13-16, 2021. Best student paper award [2nd]

T.-a. Pham, E. Soubies, A. Ayoub, D. Psaltis, M. Unser, "Adaptive Regularization for Three-Dimensional Optical Diffraction Tomography." Proceedings of the Seventeenth IEEE International Symposium on Biomedical Imaging (ISBI’20), 182--186, April 5-7, 2020. nominated for best student paper award

T.-a. Pham, E. Soubies, D. Sage, M. Unser, "Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy." Proceedings of the Sixteenth IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI’19), 321--324, April 8-11, 2019. Best student paper award [runner-up]

T.-a. Pham, E. Soubies, J. Lim, A. Goy, F. Soulez, D. Psaltis, M. Unser, "Phaseless Diffraction Tomography with Regularized Beam Propagation." Proceedings of the Fifteenth IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI’18), 1268--1271, April 4-7, 2018.

T.-a. Pham, N. Brandenberg, S. Hoenel, B. Rappaz, M. Unser, M. Lütolf, D. Sage, "Quantitative Image-Analysis of Organoids with High-Throughput Digital Holography Microscopy." Proceedings of the 2020 Quantitative BioImaging Conference (QBI’20), January 6-9, 2020.

L. Donati, E. Soubies, T.-a. Pham, M. Unser, "User-Friendly Building of Reconstruction Algorithms for Solving Inverse Problems." Proceedings of the Seventeenth IEEE International Symposium on Biomedical Imaging (ISBI’20), 1307, April 5-7, 2020.

D. Sage, T.-a. Pham, M. Unser, "3D Single Molecule Localization Microscopy: Key Outcomes of the Software Benchmarking." Proceedings of the Sixteenth IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI’19), 610, April 8-11, 2019.

T.-a. Pham, D. Sage, S. Holden, "Developments of the Ongoing 3D SMLM Software Challenge." Seventh Single Molecule Localization Microscopy Symposium (SMLMS’17), August 30-September 1, 2017.